C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043410 Hfm1 10090 - 5:106840192-106926321 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000112690 Hfm1-201 106840197-106925890 protein_coding
  ENSMUST00000117588 Hfm1-001 106840194-106926321 protein_coding
  ENSMUST00000134292 Hfm1-003 106901887-106926258 retained_intron
  ENSMUST00000148495 Hfm1-004 106840192-106895327 nonsense_mediated_decay
  ENSMUST00000148686 Hfm1-002 106901887-106925890 nonsense_mediated_decay
  ENSMUST00000155171 Hfm1-005 106841562-106889922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000112690ENSMUST00000117588ENSMUST00000134292ENSMUST00000148495ENSMUST00000148686ENSMUST00000155171
Transcript ID Adipose Bladder Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112690 N/A 0.008±0.00 N/A N/A 0.008±0.00 N/A N/A 0.040±0.00 N/A 1.070±0.46
ENSMUST00000117588 0.009±0.00 0.006±0.00 1.305±1.27 0.009±0.00 0.009±0.00 N/A N/A 0.018±0.00 0.007±0.00 1.472±0.99
ENSMUST00000134292 N/A N/A N/A N/A 0.017±0.00 0.038±0.00 N/A N/A N/A N/A
ENSMUST00000148495 0.086±0.00 0.005±0.00 0.040±0.00 N/A 0.014±0.01 0.036±0.00 0.006±0.00 0.014±0.00 N/A N/A
ENSMUST00000148686 N/A 0.015±0.01 N/A N/A 0.028±0.02 N/A N/A 0.028±0.01 0.015±0.00 N/A
ENSMUST00000155171 N/A 0.004±0.00 0.186±0.00 0.019±0.00 N/A N/A N/A 0.237±0.00 0.030±0.02 1.745±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000906 CIL_000906_0002 VISTA 5:106264330-106866018
CIL_000699 CIL_000699_0002 CGP 5:106616739-106926321
CIL_00069J CIL_00069J_0002 CGP 5:106840192-106984432

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000712 IMP resolution of meiotic recombination intermediates
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068922 hfm1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000162669 HFM1 HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) protein_coding Homo_sapiens

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