C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12397
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117674 Gm12397-001 ENSMUSG00000081309 10090 - 4:40912741-40913355 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117674 1.833±0.58 0.449±0.12 0.499±0.03 4.954±2.74 2.171±0.53 0.689±0.24 0.415±0.16 0.633±0.48 0.601±0.55 1.339±0.29 0.142±0.06 2.129±1.30 0.562±0.08 1.530±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006YC CIL_0006YC_0002 CGP 4:40804602-40931395

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377069 KDM2B-005 protein_coding Homo_sapiens 0 782
ENST00000377071 KDM2B-001 protein_coding Homo_sapiens 0 859
ENST00000392464 RNF34-005 protein_coding Homo_sapiens 0 276
ENST00000536036 KDM2B-023 retained_intron Homo_sapiens 0 536
ENST00000536437 KDM2B-201 protein_coding Homo_sapiens 0 283
ENST00000538503 KDM2B-020 retained_intron Homo_sapiens 0 555
ENST00000542973 KDM2B-022 protein_coding Homo_sapiens 0 859
ENST00000543025 KDM2B-002 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000611216 KDM2B-202 protein_coding Homo_sapiens 0 272

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