C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11889
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118402 Gm11889-001 ENSMUSG00000082876 10090 - 4:23517362-23518440 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000118402
Transcript ID Adipose Bladder Brain Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000118402 0.059±0.00 0.007±0.00 0.118±0.00 0.124±0.00 0.045±0.00 0.082±0.12 0.037±0.00 0.174±0.18 0.073±0.04 0.888±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MX CIL_0007MX_0004 UCNEbase 4:22803646-24698662
CIL_00093Q CIL_00093Q_0002 VISTA 4:23041020-23641756
CIL_00095X CIL_00095X_0002 VISTA 4:23204397-23805743
CIL_0008N8 CIL_0008N8_0002 VISTA 4:23290042-23892039
CIL_0007TE CIL_0007TE_0002 VISTA 4:23301771-23903172
CIL_0008KG CIL_0008KG_0002 VISTA 4:23336061-23937408
CIL_0008R0 CIL_0008R0_0002 VISTA 4:23413405-24014930
CIL_00093T CIL_00093T_0002 VISTA 4:23431836-24033244
CIL_0008ZZ CIL_0008ZZ_0002 VISTA 4:23510469-24112144

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263545 C7orf55-LUC7L2-201 protein_coding Homo_sapiens 0 1389
ENST00000354926 C7orf55-LUC7L2-001 protein_coding Homo_sapiens 0 1389
ENST00000456182 C7orf55-LUC7L2-003 nonsense_mediated_decay Homo_sapiens 0 1389
ENST00000463912 C7orf55-LUC7L2-004 retained_intron Homo_sapiens 0 977
ENST00000482860 C7orf55-LUC7L2-007 processed_transcript Homo_sapiens 0 560
ENST00000498518 C7orf55-LUC7L2-006 retained_intron Homo_sapiens 0 1389
ENST00000541170 C7orf55-LUC7L2-005 protein_coding Homo_sapiens 0 1389
ENST00000541515 LUC7L2-001 protein_coding Homo_sapiens 0 1389
ENST00000608368 C7orf55-LUC7L2-009 nonsense_mediated_decay Homo_sapiens 4e-39 165
ENST00000619796 C7orf55-LUC7L2-202 protein_coding Homo_sapiens 0 1389

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