C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LUC7-like 2 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541515 LUC7L2-001 ENSG00000269955 9606 + 7:139341360-139422599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000541515
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000541515 12.484±0.00 14.696±0.00 6.463±0.00 12.607±4.17 8.136±4.42 14.378±0.00 8.181±5.12 12.498±8.65 5.208±0.00 5.911±1.84 7.404±4.09 22.995±1.95 11.825±4.46 18.424±1.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QB CIL_0002QB_0001 CGP 7:139230356-139346319
CIL_00030D CIL_00030D_0001 CGP 7:139339457-139423457
CIL_00030E CIL_00030E_0001 CGP 7:139341360-139483712

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IEA mRNA binding
GO:0005685 IEA U1 snRNP
GO:0006376 IEA mRNA splice site selection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057692 Luc7l2-001 protein_coding Mus_musculus 0 1836
ENSMUST00000161227 Luc7l2-002 protein_coding Mus_musculus 0 1834
ENSMUST00000162386 Luc7l2-005 nonsense_mediated_decay Mus_musculus 0 1657
ENSMUST00000160511 Luc7l2-007 nonsense_mediated_decay Mus_musculus 0 1520
ENSMUST00000118402 Gm11889-001 processed_pseudogene Mus_musculus 0 1389
ENSMUST00000160430 Luc7l2-012 protein_coding Mus_musculus 0 1373
ENSMUST00000161538 Luc7l2-003 protein_coding Mus_musculus 0 1184
ENSMUST00000163047 Luc7l2-004 protein_coding Mus_musculus 0 1182
ENSMUST00000159936 Luc7l2-010 nonsense_mediated_decay Mus_musculus 0 448
ENSMUST00000160582 Luc7l2-006 processed_transcript Mus_musculus 0 241

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