C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNF related kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429705 SNRK-002 ENSG00000163788 9606 + 3:43286538-43351143 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000429705
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000429705 15.778±0.00 6.912±0.00 3.483±1.23 4.596±0.79 6.877±0.00 2.407±1.79 5.559±0.00 2.414±1.83 11.383±6.19 3.590±0.00 1.844±0.27 3.239±1.64 3.809±2.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003F0 CIL_0003F0_0001 CGP 3:43079232-43424764
CIL_0003F1 CIL_0003F1_0001 CGP 3:43286512-43691594

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IDA magnesium ion binding
GO:0004672 IEA protein kinase activity
GO:0004674 IDA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005524 IDA:IEA ATP binding
GO:0005634 ISS nucleus
GO:0006468 IDA:IEA protein phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0030099 TAS myeloid cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120173 Snrk-001 protein_coding Mus_musculus 0 2220
ENSMUST00000118886 Snrk-003 protein_coding Mus_musculus 0 2119
ENSMUST00000134949 Snrk-002 protein_coding Mus_musculus 0 1578
ENSMUST00000131169 Snrk-006 retained_intron Mus_musculus 0 616
ENSMUST00000151872 Snrk-007 retained_intron Mus_musculus 0 472
ENSMUST00000139181 Snrk-009 protein_coding Mus_musculus 0 385
ENSMUST00000146832 Snrk-005 protein_coding Mus_musculus 0 254
ENSMUST00000119215 Snrk-004 protein_coding Mus_musculus 0 198
ENSMUST00000145384 Snrk-008 processed_transcript Mus_musculus 9e-35 154

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