C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120378 Rpl27-ps2-001 ENSMUSG00000082171 10090 + 11:101939501-101939899 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMusclePlacentaTestisENSMUST00000120378
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Placenta Testis
ENSMUST00000120378 0.141±0.00 0.117±0.00 0.309±0.14 0.551±0.31 0.450±0.12 0.352±0.22 0.540±0.45 0.160±0.00 0.152±0.00 0.300±0.14 0.149±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000996 CIL_000996_0002 VISTA 11:101501412-102102123
CIL_00090X CIL_00090X_0002 VISTA 11:101529827-102131014
CIL_000997 CIL_000997_0002 VISTA 11:101567301-102168287
CIL_00059O CIL_00059O_0002 CGP 11:101877510-101967015

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253788 RPL27-001 protein_coding Homo_sapiens 0 448
ENST00000411843 AC096664.1-001 processed_pseudogene Homo_sapiens 0 368
ENST00000427253 AC009362.2-001 processed_pseudogene Homo_sapiens 0 375
ENST00000441321 AC016691.2-001 processed_pseudogene Homo_sapiens 0 322
ENST00000468034 RP11-829H16.2-001 processed_pseudogene Homo_sapiens 0 368
ENST00000477507 CTD-2186M15.1-001 processed_pseudogene Homo_sapiens 0 370
ENST00000586277 RPL27-006 protein_coding Homo_sapiens 0 411
ENST00000588830 RPL27-007 nonsense_mediated_decay Homo_sapiens 7.9874e-44 180
ENST00000589037 RPL27-004 protein_coding Homo_sapiens 0 448
ENST00000589913 RPL27-003 protein_coding Homo_sapiens 0 448
ENST00000590864 RPL27-008 protein_coding Homo_sapiens 0 409
ENST00000593262 RPL27-002 retained_intron Homo_sapiens 0 409

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