C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253788 RPL27-001 ENSG00000131469 9606 + 17:42998434-43002959 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253788
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253788 441.822±0.00 761.985±0.00 56.909±0.00 225.675±5.29 308.739±97.16 482.773±281.30 222.993±119.46 247.611±82.34 296.355±55.12 664.225±465.50 458.747±214.18 890.693±590.09 891.730±554.05 315.541±289.58

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA:TAS ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077856 Rpl27-001 protein_coding Mus_musculus 0 590
ENSMUST00000107249 Rpl27-002 protein_coding Mus_musculus 0 571
ENSMUST00000097682 Rpl27-ps3-201 protein_coding Mus_musculus 0 564
ENSMUST00000118048 Gm11518-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000119683 Gm6341-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000088784 Rpl27-ps1-201 processed_pseudogene Mus_musculus 0 505
ENSMUST00000121828 Gm15730-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000117470 Gm15779-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000120378 Rpl27-ps2-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000079690 Gm4825-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000120819 Gm12516-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000139939 Rpl27-003 processed_transcript Mus_musculus 0 366
ENSMUST00000187540 RP23-380A10.4-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000122442 Gm15335-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000119016 Gm11699-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000152162 Rpl27-005 processed_transcript Mus_musculus 0 219
ENSMUST00000127514 Rpl27-004 protein_coding Mus_musculus 0 219

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