C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoribosylglycinamide formyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120450 Gart-002 ENSMUSG00000022962 10090 - 16:91633405-91646935 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungMuscleOvaryPlacentaENSMUST00000120450
Transcript ID Brain Breast Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000120450 2.918±0.43 1.860±0.00 3.148±0.49 4.644±1.76 2.079±0.00 4.342±0.34 6.686±0.89 4.936±3.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EH CIL_0007EH_0002 CGP 16:91614257-91646952
CIL_000466 CIL_000466_0002 CGP 16:91621186-91679221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004637 IEA phosphoribosylamine-glycine ligase activity
GO:0004641 IEA phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004644 IEA phosphoribosylglycinamide formyltransferase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006189 IEA 'de novo' IMP biosynthetic process
GO:0008168 IEA methyltransferase activity
GO:0009113 IEA purine nucleobase biosynthetic process
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361093 GART-004 protein_coding Homo_sapiens 0 1208
ENST00000381815 GART-003 protein_coding Homo_sapiens 0 1201
ENST00000381831 GART-001 protein_coding Homo_sapiens 0 1197
ENST00000381839 GART-006 protein_coding Homo_sapiens 0 1201
ENST00000424203 GART-002 nonsense_mediated_decay Homo_sapiens 0 1190
ENST00000426819 GART-009 protein_coding Homo_sapiens 0 630
ENST00000430874 GART-007 protein_coding Homo_sapiens 0 664
ENST00000438059 GART-008 protein_coding Homo_sapiens 0 399
ENST00000441403 GART-010 protein_coding Homo_sapiens 0 398
ENST00000467575 GART-016 retained_intron Homo_sapiens 0 390
ENST00000476524 GART-011 retained_intron Homo_sapiens 0 551

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