C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: formin-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120633 Fmnl3-003 ENSMUSG00000023008 10090 - 15:99317225-99370449 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverMuscleOvaryENSMUST00000120633
Transcript ID Adrenal Brain Breast Colon Liver Muscle Ovary
ENSMUST00000120633 2.470±0.88 1.628±0.00 1.882±0.66 0.578±0.00 0.546±0.00 0.347±0.00 4.036±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009O CIL_00009O_0002 CGP 15:99317225-99410049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0008360 IEA regulation of cell shape
GO:0016477 IEA cell migration
GO:0017048 IEA Rho GTPase binding
GO:0030036 IEA actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000147440 fmnl3-002 protein_coding Danio_rerio 0 865
ENSDART00000109023 fmnl3-202 protein_coding Danio_rerio 0 846
ENSDART00000112883 fmnl2b-201 protein_coding Danio_rerio 0 420
ENST00000328118 FMNL1-201 protein_coding Homo_sapiens 0 255
ENST00000331495 FMNL1-001 protein_coding Homo_sapiens 0 472
ENST00000335154 FMNL3-002 protein_coding Homo_sapiens 0 4215
ENST00000352151 FMNL3-001 protein_coding Homo_sapiens 0 3306
ENST00000549137 FMNL3-004 retained_intron Homo_sapiens 0 2287
ENST00000550488 FMNL3-003 protein_coding Homo_sapiens 0 4045
ENST00000550970 FMNL3-005 retained_intron Homo_sapiens 0 440
ENST00000586643 FMNL1-007 protein_coding Homo_sapiens 9.94922e-44 182
ENST00000587489 FMNL1-006 protein_coding Homo_sapiens 0 239
ENST00000587856 FMNL1-005 retained_intron Homo_sapiens 0 468
ENST00000592006 FMNL1-013 processed_transcript Homo_sapiens 0 411

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