C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 61
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121204 Wdr61-002 ENSMUSG00000061559 10090 - 9:54717164-54734519 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverPlacentaENSMUST00000121204
Transcript ID Bladder Brain Colon Kidney Liver Placenta
ENSMUST00000121204 15.189±0.00 11.066±0.05 4.940±0.48 6.236±0.85 8.785±2.89 18.062±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TL CIL_0003TL_0002 CGP 9:54604877-54716315
CIL_0003TI CIL_0003TI_0002 CGP 9:54698873-54734519
CIL_00050O CIL_00050O_0003 CGP 9:54714735-54773110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016055 IEA Wnt signaling pathway
GO:0016593 ISS Cdc73/Paf1 complex
GO:0032968 ISS positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 ISS transcriptionally active chromatin
GO:0045638 ISS negative regulation of myeloid cell differentiation
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051571 ISS positive regulation of histone H3-K4 methylation
GO:0055087 ISS Ski complex
GO:0080182 ISS histone H3-K4 trimethylation
GO:2001162 ISS positive regulation of histone H3-K79 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267973 WDR61-001 protein_coding Homo_sapiens 0 1424
ENST00000558311 WDR61-006 protein_coding Homo_sapiens 0 1428
ENST00000558412 WDR61-012 retained_intron Homo_sapiens 0 281
ENST00000558453 WDR61-014 protein_coding Homo_sapiens 4.06377e-44 182
ENST00000558459 WDR61-017 protein_coding Homo_sapiens 0 926
ENST00000558840 WDR61-007 processed_transcript Homo_sapiens 0.00000000003 73
ENST00000559332 WDR61-011 processed_transcript Homo_sapiens 0 281
ENST00000559700 WDR61-003 retained_intron Homo_sapiens 0 499
ENST00000559848 WDR61-010 nonsense_mediated_decay Homo_sapiens 0 859
ENST00000559940 WDR61-005 retained_intron Homo_sapiens 2e-25 122
ENST00000560063 WDR61-004 retained_intron Homo_sapiens 0 255
ENST00000560569 WDR61-016 protein_coding Homo_sapiens 0 1345
ENST00000560610 WDR61-009 nonsense_mediated_decay Homo_sapiens 0 761
ENST00000560807 WDR61-013 protein_coding Homo_sapiens 0 665
ENST00000560946 WDR61-008 retained_intron Homo_sapiens 2e-22 110
ENST00000561347 WDR61-002 retained_intron Homo_sapiens 0.0000000007 69

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