C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121219 Frmd5-005 ENSMUSG00000027238 10090 - 2:121548087-121787344 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000121219
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000121219 0.125±0.03 7.433±0.78 0.082±0.03 0.069±0.00 17.395±0.79 0.032±0.00 0.022±0.01 0.022±0.00 10.724±1.96 0.053±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_00067Y CIL_00067Y_0002 CGP 2:121506723-121807087
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008092 IEA cytoskeletal protein binding
GO:0008150 ND biological_process
GO:0019898 IEA extrinsic component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113280 FRMD5 (1 of 2)-201 protein_coding Danio_rerio 0 952
ENST00000402883 FRMD5-009 protein_coding Homo_sapiens 0 1886
ENST00000417257 FRMD5-001 protein_coding Homo_sapiens 0 2726
ENST00000421674 FRMD5-003 nonsense_mediated_decay Homo_sapiens 0 2362
ENST00000449926 FRMD5-006 protein_coding Homo_sapiens 0 1886
ENST00000451277 FRMD5-010 nonsense_mediated_decay Homo_sapiens 0 1158
ENST00000458630 FRMD5-004 nonsense_mediated_decay Homo_sapiens 0 1853
ENST00000473965 FRMD5-008 retained_intron Homo_sapiens 0 370
ENST00000479319 FRMD5-007 retained_intron Homo_sapiens 0 357
ENST00000484674 FRMD5-005 protein_coding Homo_sapiens 0 1805
ENST00000558108 FRMD5-012 protein_coding Homo_sapiens 0 732
ENST00000618556 FRMD5-201 protein_coding Homo_sapiens 0 1853

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