C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rabphilin 3A-like (without C2 domains)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121287 Rph3al-001 ENSMUSG00000020847 10090 - 11:75830999-75937738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121287
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121287 1.838±1.15 6.134±3.33 1.196±0.02 0.400±0.01 0.764±0.35 3.572±0.69 1.622±0.18 2.141±0.62 0.463±0.24 4.843±0.65 3.292±0.88 7.643±1.67 0.493±0.34 0.504±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005W CIL_00005W_0002 CGP 11:75768966-75938429
CIL_00017J CIL_00017J_0002 CGP 11:75830999-76003569

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA exocytosis
GO:0017137 IEA Rab GTPase binding
GO:0017158 IMP regulation of calcium ion-dependent exocytosis
GO:0030141 IEA secretory granule
GO:0030274 IEA LIM domain binding
GO:0030667 IEA secretory granule membrane
GO:0042493 IEA response to drug
GO:0042593 IMP glucose homeostasis
GO:0045744 IMP negative regulation of G-protein coupled receptor protein signaling pathway
GO:0046872 IEA metal ion binding
GO:0050714 IEA positive regulation of protein secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323434 RPH3AL-002 protein_coding Homo_sapiens 0 433
ENST00000331302 RPH3AL-001 protein_coding Homo_sapiens 0 900
ENST00000536489 RPH3AL-003 protein_coding Homo_sapiens 0 433
ENST00000570638 RPH3AL-011 protein_coding Homo_sapiens 0 601
ENST00000570893 RPH3AL-019 processed_transcript Homo_sapiens 0 333
ENST00000570954 RPH3AL-017 processed_transcript Homo_sapiens 0 385
ENST00000572075 RPH3AL-020 processed_transcript Homo_sapiens 3e-35 152
ENST00000573780 RPH3AL-006 protein_coding Homo_sapiens 0 569
ENST00000574722 RPH3AL-016 protein_coding Homo_sapiens 0 433
ENST00000574953 RPH3AL-018 protein_coding Homo_sapiens 0 549
ENST00000575130 RPH3AL-005 protein_coding Homo_sapiens 0 398
ENST00000575736 RPH3AL-010 protein_coding Homo_sapiens 0 477
ENST00000576001 RPH3AL-021 processed_transcript Homo_sapiens 0 536
ENST00000576420 RPH3AL-012 protein_coding Homo_sapiens 0 739
ENST00000577079 RPH3AL-008 protein_coding Homo_sapiens 0 730
ENST00000608278 RPH3AL-202 protein_coding Homo_sapiens 0 900
ENST00000608519 RPH3AL-203 protein_coding Homo_sapiens 0 433
ENST00000609977 RPH3AL-001 protein_coding Homo_sapiens 0 571
ENST00000618002 RPH3AL-201 protein_coding Homo_sapiens 0 900

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