C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: latrophilin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000512091 LPHN3-001 ENSG00000150471 9606 + 4:61201258-62078335 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungOvaryPlacentaENST00000512091
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Ovary Placenta
ENST00000512091 0.470±0.00 2.530±0.87 0.256±0.00 0.290±0.00 0.061±0.02 0.280±0.27 0.554±0.00 0.046±0.00 0.036±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WQ CIL_0001WQ_0001 CGP 4:57030773-62078335
CIL_0001WJ CIL_0001WJ_0001 CGP 4:61201258-64409468

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004888 IEA transmembrane signaling receptor activity
GO:0004930 NAS:IEA G-protein coupled receptor activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007186 NAS:IEA G-protein coupled receptor signaling pathway
GO:0007218 IEA neuropeptide signaling pathway
GO:0016020 IEA membrane
GO:0016021 NAS:IEA integral component of membrane
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120128 Lphn3-007 protein_coding Mus_musculus 0 6222
ENSMUST00000118442 Lphn3-016 protein_coding Mus_musculus 0 5958
ENSMUST00000119788 Lphn3-010 protein_coding Mus_musculus 0 5873
ENSMUST00000118078 Lphn3-011 protein_coding Mus_musculus 0 5840
ENSMUST00000119385 Lphn3-008 protein_coding Mus_musculus 0 5605
ENSMUST00000120292 Lphn3-020 protein_coding Mus_musculus 0 4686
ENSMUST00000117985 Lphn3-019 protein_coding Mus_musculus 0 4686
ENSMUST00000072521 Lphn3-202 protein_coding Mus_musculus 0 4673
ENSMUST00000036068 Lphn3-201 protein_coding Mus_musculus 0 4650
ENSMUST00000120673 Lphn3-014 protein_coding Mus_musculus 0 4641
ENSMUST00000120445 Lphn3-013 protein_coding Mus_musculus 0 4641
ENSMUST00000122037 Lphn3-023 protein_coding Mus_musculus 0 4479
ENSMUST00000118034 Lphn3-015 protein_coding Mus_musculus 0 4479
ENSMUST00000120144 Lphn3-012 protein_coding Mus_musculus 0 4479
ENSMUST00000117253 Lphn3-006 protein_coding Mus_musculus 0 4475
ENSMUST00000121707 Lphn3-001 protein_coding Mus_musculus 0 4464
ENSMUST00000122356 Lphn3-009 protein_coding Mus_musculus 0 4434
ENSMUST00000117407 Lphn3-005 protein_coding Mus_musculus 0 4434
ENSMUST00000121641 Lphn3-017 protein_coding Mus_musculus 0 4434
ENSMUST00000132375 Lphn3-002 nonsense_mediated_decay Mus_musculus 0 4375
ENSMUST00000136104 Lphn3-021 retained_intron Mus_musculus 0 2507
ENSMUST00000149280 Lphn3-022 retained_intron Mus_musculus 0 2174
ENSMUST00000124117 Lphn3-018 protein_coding Mus_musculus 0 2100
ENSMUST00000127046 Lphn3-024 retained_intron Mus_musculus 0 1666
ENSMUST00000153264 Lphn3-029 processed_transcript Mus_musculus 0 1323
ENSMUST00000126227 Lphn3-031 processed_transcript Mus_musculus 0 654
ENSMUST00000140356 Lphn3-025 retained_intron Mus_musculus 0 448
ENSMUST00000147226 Lphn3-026 retained_intron Mus_musculus 0 322
ENSDART00000131113 LPHN3 (2 of 2)-201 protein_coding Danio_rerio 6e-40 172

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