C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12864
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122207 Gm12864-001 ENSMUSG00000082143 10090 + 4:118987014-118988019 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000122207
Transcript ID Placenta Testis
ENSMUST00000122207 0.059±0.02 0.031±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N2 CIL_0008N2_0002 VISTA 4:118719151-119320076
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 981
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 767
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 979
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 981
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 981
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 436
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 789
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 494
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 837
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 551
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 520
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 409
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 3e-20 104
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 767
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 767
ENST00000489113 GAPDHP47-001 processed_pseudogene Homo_sapiens 0 473
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 680
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 671
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 737
ENST00000515281 GAPDHP70-001 processed_pseudogene Homo_sapiens 0 623
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 449
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 902

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