C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beclin 1, autophagy related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122817 Becn1-003 ENSMUSG00000035086 10090 - 11:101288262-101302260 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonLiverLungMuscleOvaryPlacentaENSMUST00000122817
Transcript ID Adipose Bladder Brain Colon Liver Lung Muscle Ovary Placenta
ENSMUST00000122817 11.438±2.79 12.246±3.92 12.740±1.46 12.139±0.00 12.680±2.75 9.833±1.37 4.764±0.00 12.694±2.61 6.775±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SB CIL_0005SB_0002 CGP 11:101277968-101296317
CIL_0005S8 CIL_0005S8_0002 CGP 11:101279012-101302286
CIL_0005S9 CIL_0005S9_0002 CGP 11:101285952-101323537

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315066 CNTD1-003 processed_transcript Homo_sapiens 0 501
ENST00000361523 BECN1-002 protein_coding Homo_sapiens 0 1725
ENST00000438274 BECN1-003 protein_coding Homo_sapiens 0 688
ENST00000543382 BECN1-004 retained_intron Homo_sapiens 0 2449
ENST00000585515 BECN1-011 retained_intron Homo_sapiens 0 459
ENST00000586589 BECN1-019 protein_coding Homo_sapiens 0 850
ENST00000586754 BECN1-013 processed_transcript Homo_sapiens 0 416
ENST00000587880 BECN1-020 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000588276 BECN1-021 protein_coding Homo_sapiens 0 499
ENST00000588408 CNTD1-001 protein_coding Homo_sapiens 5e-39 167
ENST00000589492 BECN1-016 retained_intron Homo_sapiens 0 294
ENST00000589493 BECN1-014 retained_intron Homo_sapiens 0 603
ENST00000589636 BECN1-008 protein_coding Homo_sapiens 0 272
ENST00000589663 BECN1-017 protein_coding Homo_sapiens 0 344
ENST00000590099 BECN1-001 protein_coding Homo_sapiens 0 1725
ENST00000590185 BECN1-022 retained_intron Homo_sapiens 0 449
ENST00000590764 BECN1-018 protein_coding Homo_sapiens 0 708
ENST00000591085 BECN1-010 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000591307 BECN1-007 retained_intron Homo_sapiens 0 324
ENST00000593112 BECN1-006 retained_intron Homo_sapiens 0 414
ENST00000593205 BECN1-012 protein_coding Homo_sapiens 0 497
ENST00000612631 BECN1-009 protein_coding Homo_sapiens 0 206
ENST00000617806 BECN1-005 retained_intron Homo_sapiens 0 887

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