C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intermediate filament family orphan 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123827 Iffo2-001 ENSMUSG00000041025 10090 + 4:139530548-139617082 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000123827
Transcript ID Placenta
ENSMUST00000123827 29.879±15.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WQ CIL_0003WQ_0002 CGP 4:139352609-139620382

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005198 IEA structural molecule activity
GO:0005575 ND cellular_component
GO:0005882 IEA intermediate filament
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336604 IFFO1-001 protein_coding Homo_sapiens 0 265
ENST00000355609 IFFO2-003 protein_coding Homo_sapiens 0 407
ENST00000356896 IFFO1-011 protein_coding Homo_sapiens 0 255
ENST00000396830 IFFO1-010 retained_intron Homo_sapiens 0 255
ENST00000396840 IFFO1-008 protein_coding Homo_sapiens 0 265
ENST00000416166 IFFO2-002 protein_coding Homo_sapiens 0 905
ENST00000436152 IFFO1-201 protein_coding Homo_sapiens 0 255
ENST00000455833 IFFO2-001 protein_coding Homo_sapiens 0 1352
ENST00000465801 IFFO1-003 protein_coding Homo_sapiens 0 265
ENST00000471408 IFFO1-004 retained_intron Homo_sapiens 0 265
ENST00000472558 IFFO1-005 retained_intron Homo_sapiens 0 265
ENST00000487279 IFFO1-007 nonsense_mediated_decay Homo_sapiens 0 255
ENST00000488007 IFFO1-006 retained_intron Homo_sapiens 0 196
ENST00000494072 RP13-279N23.2-001 nonsense_mediated_decay Homo_sapiens 0 1310
ENST00000615885 IFFO1-202 protein_coding Homo_sapiens 0 255
ENST00000619571 IFFO1-203 protein_coding Homo_sapiens 0 255

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