C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intermediate filament family orphan 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455833 IFFO2-001 ENSG00000169991 9606 - 1:18904281-18956686 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000455833
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000455833 1.552±0.00 3.364±0.00 0.878±0.00 3.907±2.97 4.203±3.21 1.585±0.94 0.590±0.29 7.269±0.00 1.266±0.00 3.646±2.44 1.256±0.00 3.092±0.72 4.367±1.17 1.098±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CW CIL_0008CW_0001 VISTA 1:18332177-18933790
CIL_0002WB CIL_0002WB_0002 CGP 1:18849273-18921121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174078 Iffo2-002 protein_coding Mus_musculus 0 2394
ENSMUST00000040023 Iffo2-201 protein_coding Mus_musculus 0 1352
ENSMUST00000123827 Iffo2-001 protein_coding Mus_musculus 0 1352
ENSMUST00000178644 Gm21969-001 nonsense_mediated_decay Mus_musculus 0 1280
ENSMUST00000051171 Iffo1-201 protein_coding Mus_musculus 0 276
ENSMUST00000135559 Iffo1-003 retained_intron Mus_musculus 0 276
ENSMUST00000117675 Iffo1-002 protein_coding Mus_musculus 0 276
ENSMUST00000119527 Iffo1-001 protein_coding Mus_musculus 0 276
ENSMUST00000088276 Iffo1-202 protein_coding Mus_musculus 0 276
ENSMUST00000148835 Iffo1-007 protein_coding Mus_musculus 0 267
ENSMUST00000144364 Iffo1-005 nonsense_mediated_decay Mus_musculus 0 267
ENSMUST00000139071 Iffo1-008 retained_intron Mus_musculus 0 243
ENSMUST00000150474 Iffo1-010 retained_intron Mus_musculus 0 211
ENSMUST00000141230 Iffo1-004 retained_intron Mus_musculus 0 211
ENSDART00000055711 CABZ01030889.1-201 protein_coding Danio_rerio 0 206

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