C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA aspartic acid methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377799 TRDMT1-001 ENSG00000107614 9606 - 10:17146737-17201682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377799 0.360±0.00 0.398±0.00 0.201±0.00 0.283±0.00 0.471±0.00 0.223±0.00 0.298±0.00 0.693±0.00 0.108±0.00 0.295±0.12 0.112±0.00 0.891±0.21 0.421±0.15 0.618±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IU CIL_0000IU_0002 CGP 10:16823964-17202054
CIL_00046B CIL_00046B_0002 CGP 10:17142254-17237593

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001975 IEA response to amphetamine
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0003886 TAS DNA (cytosine-5-)-methyltransferase activity
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0008168 IEA methyltransferase activity
GO:0008175 IDA tRNA methyltransferase activity
GO:0030488 IDA tRNA methylation
GO:0090116 TAS C-5 methylation of cytosine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000124488 Trdmt1-001 protein_coding Mus_musculus 0 1092
ENSMUST00000028055 Trdmt1-003 processed_transcript Mus_musculus 0 721
ENSMUST00000144957 Trdmt1-002 processed_transcript Mus_musculus 0 206

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