C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmoplakin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124830 Dsp-001 ENSMUSG00000054889 10090 + 13:38151348-38198577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000124830
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000124830 0.623±0.43 0.089±0.04 5.527±0.84 0.306±0.07 0.565±0.23 8.203±1.41 25.617±2.69 1.193±0.06 1.446±0.43 3.550±1.86 0.078±0.00 3.918±4.18 29.269±20.46 0.063±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000817 CIL_000817_0002 VISTA 13:37577817-38179534
CIL_0007T6 CIL_0007T6_0002 VISTA 13:37870525-38472280
CIL_00037Y CIL_00037Y_0002 CGP 13:38036989-38198577
CIL_00037Z CIL_00037Z_0002 CGP 13:38151328-38227663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001533 IEA cornified envelope
GO:0002934 IMP desmosome organization
GO:0003223 IMP ventricular compact myocardium morphogenesis
GO:0005080 IEA protein kinase C binding
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005882 IDA intermediate filament
GO:0005886 IEA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005916 IEA fascia adherens
GO:0014704 IDA intercalated disc
GO:0016020 ISO membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016337 IMP single organismal cell-cell adhesion
GO:0018149 IEA peptide cross-linking
GO:0030057 IDA desmosome
GO:0030216 IEA keratinocyte differentiation
GO:0030674 IEA protein binding, bridging
GO:0034332 IMP adherens junction organization
GO:0042060 IEA wound healing
GO:0043588 IMP skin development
GO:0044822 IEA poly(A) RNA binding
GO:0045104 IMP intermediate filament cytoskeleton organization
GO:0045109 IMP intermediate filament organization
GO:0050839 IEA cell adhesion molecule binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071896 IMP protein localization to adherens junction
GO:0086005 IEA ventricular cardiac muscle cell action potential
GO:0086069 IEA bundle of His cell to Purkinje myocyte communication
GO:0086091 IEA regulation of heart rate by cardiac conduction
GO:0097110 IEA scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379802 DSP-001 protein_coding Homo_sapiens 0 9973
ENST00000418664 DSP-002 protein_coding Homo_sapiens 0 4095
ENST00000506617 DSP-007 retained_intron Homo_sapiens 0 538

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