C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP40 pre-mRNA processing factor 40 homolog A (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125243 Prpf40a-002 ENSMUSG00000061136 10090 - 2:53153044-53191284 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000125243
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000125243 7.645±1.91 14.047±2.83 5.855±0.00 9.654±0.71 7.547±1.95 3.484±0.35 4.708±0.93 5.467±0.90 8.458±0.91 21.195±4.91 10.760±4.26 18.754±2.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E5 CIL_0007E5_0002 CGP 2:52857860-53191284
CIL_0007DS CIL_0007DS_0002 CGP 2:53134704-53219220

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0070064 IDA proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354363 PRPF40A-015 nonsense_mediated_decay Homo_sapiens 0 1199
ENST00000410080 PRPF40A-001 protein_coding Homo_sapiens 0 1742
ENST00000448428 PRPF40A-008 protein_coding Homo_sapiens 0 501
ENST00000450303 PRPF40A-002 retained_intron Homo_sapiens 0 462
ENST00000467114 PRPF40A-009 retained_intron Homo_sapiens 0 394
ENST00000486100 PRPF40A-003 processed_transcript Homo_sapiens 0 412
ENST00000489741 PRPF40A-006 retained_intron Homo_sapiens 0 209
ENST00000493468 PRPF40A-016 protein_coding Homo_sapiens 0 719
ENST00000545856 PRPF40A-004 protein_coding Homo_sapiens 0 1513

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