C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap1 interacting factor 1 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125322 Rif1-004 ENSMUSG00000036202 10090 + 2:52110984-52122056 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainMuscleOvaryPlacentaTestisENSMUST00000125322
Transcript ID Bladder Brain Muscle Ovary Placenta Testis
ENSMUST00000125322 0.926±0.21 3.564±0.00 0.783±0.28 6.107±3.23 2.495±2.18 25.418±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S5 CIL_0003S5_0003 CGP 2:52038009-52122383
CIL_0003S6 CIL_0003S6_0003 CGP 2:52072837-52338798

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243326 RIF1-001 protein_coding Homo_sapiens 0 599
ENST00000428287 RIF1-004 protein_coding Homo_sapiens 0 894
ENST00000430328 RIF1-007 protein_coding Homo_sapiens 0 894
ENST00000444746 RIF1-003 protein_coding Homo_sapiens 0 599
ENST00000453091 RIF1-002 protein_coding Homo_sapiens 0 894
ENST00000454583 RIF1-008 nonsense_mediated_decay Homo_sapiens 0 599

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