C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 21B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125446 Ttc21b-003 ENSMUSG00000034848 10090 - 2:66184643-66256592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryPlacentaTestisENSMUST00000125446
Transcript ID Muscle Ovary Placenta Testis
ENSMUST00000125446 0.156±0.05 2.020±1.07 0.546±0.27 23.271±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0002 VISTA 2:65692128-66294633
CIL_0006CI CIL_0006CI_0002 CGP 2:66082766-66256617
CIL_0006CL CIL_0006CL_0002 CGP 2:66184327-66440840

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003674 ND molecular_function
GO:0005929 IDA cilium
GO:0007224 IMP smoothened signaling pathway
GO:0008589 IMP regulation of smoothened signaling pathway
GO:0021591 IMP ventricular system development
GO:0021798 IMP forebrain dorsal/ventral pattern formation
GO:0030991 IDA intraciliary transport particle A
GO:0035721 IMP intraciliary retrograde transport
GO:0035735 IMP intraciliary transport involved in cilium morphogenesis
GO:0060271 IMP cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243344 TTC21B-001 protein_coding Homo_sapiens 0 3493
ENST00000392695 TTC21B-003 nonsense_mediated_decay Homo_sapiens 0 761

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