C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (metal ion transporter), member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125890 Slc39a11-007 ENSMUSG00000041654 10090 - 11:113369728-113650071 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungOvaryTestisENSMUST00000125890
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Ovary Testis
ENSMUST00000125890 5.350±0.00 10.134±1.59 7.120±1.13 22.978±4.77 7.152±0.49 6.724±0.00 8.432±2.02 3.455±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096Z CIL_00096Z_0002 VISTA 11:112713161-113315514
CIL_00067E CIL_00067E_0002 CGP 11:112782224-113650079
CIL_00067F CIL_00067F_0002 CGP 11:113244853-113650079

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255559 SLC39A11-001 protein_coding Homo_sapiens 0 590
ENST00000542342 SLC39A11-002 protein_coding Homo_sapiens 0 496
ENST00000578620 SLC39A11-004 protein_coding Homo_sapiens 3e-26 122
ENST00000579018 SLC39A11-005 protein_coding Homo_sapiens 9.94922e-44 180
ENST00000579732 SLC39A11-012 protein_coding Homo_sapiens 0 590
ENST00000580557 SLC39A11-003 protein_coding Homo_sapiens 0 590
ENST00000581005 SLC39A11-009 processed_transcript Homo_sapiens 0 207
ENST00000582179 SLC39A11-008 retained_intron Homo_sapiens 3e-36 156
ENST00000583146 SLC39A11-007 protein_coding Homo_sapiens 0 497

Loading