C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127476 Chd7-002 ENSMUSG00000041235 10090 + 4:8690470-8785591 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000127476
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000127476 0.609±0.00 0.978±0.19 2.603±0.00 2.563±0.17 0.773±0.00 0.432±0.03 0.595±0.00 1.737±0.09 0.679±0.15 0.814±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000379 CIL_000379_0002 CGP 4:8535644-8867659
CIL_0007J7 CIL_0007J7_0002 UCNEbase 4:8577404-8867660
CIL_0003FX CIL_0003FX_0002 CGP 4:8690406-9451691

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0001701 IMP in utero embryonic development
GO:0003007 IMP heart morphogenesis
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0007512 IMP adult heart development
GO:0007605 IMP sensory perception of sound
GO:0007626 IMP locomotory behavior
GO:0007628 IMP adult walking behavior
GO:0008015 IMP blood circulation
GO:0016568 IEA chromatin modification
GO:0021553 IMP olfactory nerve development
GO:0021772 IMP olfactory bulb development
GO:0030540 IMP female genitalia development
GO:0035116 IMP embryonic hindlimb morphogenesis
GO:0040018 IMP positive regulation of multicellular organism growth
GO:0042048 IMP olfactory behavior
GO:0042471 IMP ear morphogenesis
GO:0042472 IMP inner ear morphogenesis
GO:0043010 IMP camera-type eye development
GO:0043584 IMP nose development
GO:0048752 IGI semicircular canal morphogenesis
GO:0048844 IGI artery morphogenesis
GO:0050767 IMP regulation of neurogenesis
GO:0060021 IMP palate development
GO:0060429 IMP epithelium development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000423902 CHD7-001 protein_coding Homo_sapiens 0 2929
ENST00000524602 CHD7-002 protein_coding Homo_sapiens 0 2239
ENST00000525508 CHD7-003 protein_coding Homo_sapiens 0 2405
ENST00000526846 CHD7-004 protein_coding Homo_sapiens 0 296
ENST00000527825 CHD7-012 nonsense_mediated_decay Homo_sapiens 0 499

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