C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmoplakin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127906 Dsp-002 ENSMUSG00000054889 10090 + 13:38151328-38198577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127906
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127906 0.970±0.92 0.384±0.18 3.066±0.29 0.364±0.23 1.932±0.73 19.123±1.94 24.306±1.07 1.201±0.52 1.331±0.79 4.751±1.76 0.050±0.06 3.387±2.07 19.093±11.91 0.211±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000817 CIL_000817_0002 VISTA 13:37577817-38179534
CIL_0007T6 CIL_0007T6_0002 VISTA 13:37870525-38472280
CIL_00037Y CIL_00037Y_0002 CGP 13:38036989-38198577
CIL_00037Z CIL_00037Z_0002 CGP 13:38151328-38227663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002934 IMP desmosome organization
GO:0005739 IDA mitochondrion
GO:0005856 IEA cytoskeleton
GO:0005911 IDA cell-cell junction
GO:0014704 IDA intercalated disc
GO:0016020 ISO membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016337 IMP single organismal cell-cell adhesion
GO:0030057 IDA desmosome
GO:0034332 IMP adherens junction organization
GO:0043588 IMP skin development
GO:0045104 IMP intermediate filament cytoskeleton organization
GO:0050839 IEA cell adhesion molecule binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379802 DSP-001 protein_coding Homo_sapiens 0 4095
ENST00000418664 DSP-002 protein_coding Homo_sapiens 0 7856
ENST00000506617 DSP-007 retained_intron Homo_sapiens 0 538

Loading