C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein D-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128187 Hnrnpdl-001 ENSMUSG00000029328 10090 - 5:100033577-100039222 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000128187
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000128187 2.581±0.00 24.077±2.94 36.091±11.80 5.541±0.06 10.410±0.79 3.884±0.94 23.371±12.59 6.987±1.61 13.304±1.29 15.358±5.10 22.560±7.51 5.330±1.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JO CIL_0007JO_0002 UCNEbase 5:99961884-100035864
CIL_00052Q CIL_00052Q_0003 CGP 5:100033577-100068762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 ISA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0003723 ISA RNA binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008143 IEA poly(A) binding
GO:0010468 IEA regulation of gene expression
GO:0016071 ISA mRNA metabolic process
GO:0034046 IEA poly(G) binding
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295470 HNRNPDL-001 protein_coding Homo_sapiens 0 2268
ENST00000349655 HNRNPDL-005 nonsense_mediated_decay Homo_sapiens 0 1511
ENST00000427435 RP11-2P2.1-001 processed_pseudogene Homo_sapiens 7e-24 111
ENST00000502762 HNRNPDL-002 nonsense_mediated_decay Homo_sapiens 0 1892
ENST00000507721 HNRNPDL-004 protein_coding Homo_sapiens 0 1432
ENST00000514511 HNRNPDL-003 nonsense_mediated_decay Homo_sapiens 0 701
ENST00000602300 HNRNPDL-006 protein_coding Homo_sapiens 0 1810
ENST00000614627 HNRNPDL-201 protein_coding Homo_sapiens 0 1504
ENST00000621267 HNRNPDL-202 protein_coding Homo_sapiens 0 2268

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