C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128217 Zkscan2-002 ENSMUSG00000030757 10090 - 7:123494214-123500449 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000128217
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000128217 0.082±0.00 0.037±0.02 0.074±0.05 0.018±0.01 0.025±0.02 0.029±0.01 0.022±0.00 0.020±0.00 0.112±0.00 0.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KP CIL_0005KP_0002 CGP 7:123462294-123500449
CIL_0003X1 CIL_0003X1_0002 CGP 7:123479516-124398989

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IBA nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328086 ZKSCAN2-001 protein_coding Homo_sapiens 0 584
ENST00000565590 ZKSCAN2-003 retained_intron Homo_sapiens 0 584
ENST00000569150 ZKSCAN2-002 nonsense_mediated_decay Homo_sapiens 0 584

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