C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128302 Smyd3-001 ENSMUSG00000055067 10090 - 1:178951960-179518034 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000128302
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000128302 0.515±0.12 0.537±0.10 0.846±0.24 1.211±0.64 0.516±0.13 0.525±0.22 0.203±0.05 0.558±0.11 0.180±0.07 0.722±0.18 0.499±0.09 0.717±0.22 0.114±0.06 0.219±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KU CIL_0000KU_0003 CGP 1:178529125-179518041
CIL_0007AO CIL_0007AO_0003 CGP 1:178951960-179546267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000993 IDA RNA polymerase II core binding
GO:0001162 IDA RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006334 IMP nucleosome assembly
GO:0006469 IMP negative regulation of protein kinase activity
GO:0014904 IMP myotube cell development
GO:0018024 IDA histone-lysine N-methyltransferase activity
GO:0033138 IMP positive regulation of peptidyl-serine phosphorylation
GO:0034968 IEA histone lysine methylation
GO:0045184 IMP establishment of protein localization
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0071549 IDA cellular response to dexamethasone stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366516 SMYD3-003 retained_intron Homo_sapiens 0 898
ENST00000366517 SMYD3-002 processed_transcript Homo_sapiens 0 900
ENST00000391836 SMYD3-013 protein_coding Homo_sapiens 0 597
ENST00000453676 SMYD3-014 protein_coding Homo_sapiens 0 453
ENST00000464398 SMYD3-006 processed_transcript Homo_sapiens 0 433
ENST00000470510 SMYD3-009 processed_transcript Homo_sapiens 0 643
ENST00000470863 SMYD3-004 processed_transcript Homo_sapiens 0 595
ENST00000483072 SMYD3-017 processed_transcript Homo_sapiens 8.00001e-41 171
ENST00000488153 SMYD3-016 processed_transcript Homo_sapiens 0 303
ENST00000490107 SMYD3-001 protein_coding Homo_sapiens 0 1496
ENST00000492487 SMYD3-005 processed_transcript Homo_sapiens 0 643
ENST00000493441 SMYD3-008 processed_transcript Homo_sapiens 0 793

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