C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras responsive element binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128570 Rreb1-005 ENSMUSG00000039087 10090 + 13:37826315-37952000 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000128570
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000128570 1.636±0.00 5.347±0.81 0.435±0.20 1.235±0.04 3.914±0.00 1.036±0.00 2.153±0.97 4.824±0.00 2.696±1.40 1.867±0.00 6.462±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S8 CIL_0003S8_0002 CGP 13:37345345-37952002
CIL_000817 CIL_000817_0002 VISTA 13:37577817-38179534
CIL_0003S7 CIL_0003S7_0002 CGP 13:37778400-37994190

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334984 RREB1-003 protein_coding Homo_sapiens 0 3930
ENST00000349384 RREB1-002 protein_coding Homo_sapiens 0 3668
ENST00000379933 RREB1-004 protein_coding Homo_sapiens 0 3663
ENST00000379938 RREB1-001 protein_coding Homo_sapiens 0 4052
ENST00000471433 RREB1-011 protein_coding Homo_sapiens 0 713
ENST00000475946 RREB1-005 retained_intron Homo_sapiens 0 961
ENST00000483150 RREB1-008 protein_coding Homo_sapiens 0 2658
ENST00000491191 RREB1-007 protein_coding Homo_sapiens 0 586
ENST00000611109 RREB1-201 protein_coding Homo_sapiens 0 857

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