C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tyrosyl-DNA phosphodiesterase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128739 Tdp1-006 ENSMUSG00000021177 10090 + 12:99914006-99955219 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000128739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000128739 2.254±0.23 1.243±0.31 2.193±0.00 3.383±0.00 2.147±0.26 1.421±0.70 1.795±0.18 2.583±0.47 0.841±0.31 2.449±0.46 0.937±0.04 4.749±0.04 5.278±1.30 10.262±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C6 CIL_0005C6_0002 CGP 12:99717531-99955219
CIL_0001TZ CIL_0001TZ_0002 CGP 12:99884517-100062682

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335725 TDP1-001 protein_coding Homo_sapiens 0 531
ENST00000393452 TDP1-003 protein_coding Homo_sapiens 0 346
ENST00000393454 TDP1-006 protein_coding Homo_sapiens 0 531
ENST00000545686 TDP1-004 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000554976 TDP1-002 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000555178 TDP1-005 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000555880 TDP1-007 protein_coding Homo_sapiens 0 344
ENST00000556063 TDP1-008 protein_coding Homo_sapiens 0 429

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