C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tyrosyl-DNA phosphodiesterase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393454 TDP1-006 ENSG00000042088 9606 + 14:89955938-90043344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverLungMuscleOvaryPlacentaENST00000393454
Transcript ID Adrenal Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000393454 1.584±0.00 0.857±0.23 0.143±0.00 1.518±0.00 0.406±0.00 0.815±0.24 0.418±0.00 0.745±0.14 1.578±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C6 CIL_0005C6_0001 CGP 14:89794669-90044768
CIL_0001TZ CIL_0001TZ_0001 CGP 14:89954939-90185857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000012 IDA single strand break repair
GO:0003690 IDA double-stranded DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0004527 IEA exonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006281 IDA:IEA DNA repair
GO:0006302 IDA double-strand break repair
GO:0008081 IEA phosphoric diester hydrolase activity
GO:0008219 IEA cell death
GO:0017005 IDA 3'-tyrosyl-DNA phosphodiesterase activity
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021594 Tdp1-201 protein_coding Mus_musculus 0 1561
ENSMUST00000153627 Tdp1-001 protein_coding Mus_musculus 0 1561
ENSMUST00000151019 Tdp1-002 retained_intron Mus_musculus 0 1376
ENSMUST00000128739 Tdp1-006 retained_intron Mus_musculus 0 531

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