C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tyrosyl-DNA phosphodiesterase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555178 TDP1-005 ENSG00000042088 9606 + 14:89956572-90043315 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLiverLungTestisENST00000555178
Transcript ID Adipose Brain Colon Heart Liver Lung Testis
ENST00000555178 0.743±0.00 0.408±0.00 0.306±0.00 0.214±0.00 0.692±0.00 1.005±0.00 7.562±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C6 CIL_0005C6_0001 CGP 14:89794669-90044768
CIL_0001TZ CIL_0001TZ_0001 CGP 14:89954939-90185857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0008081 IEA phosphoric diester hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021594 Tdp1-201 protein_coding Mus_musculus 0 1014
ENSMUST00000153627 Tdp1-001 protein_coding Mus_musculus 0 1014
ENSMUST00000151019 Tdp1-002 retained_intron Mus_musculus 0 830
ENSMUST00000128739 Tdp1-006 retained_intron Mus_musculus 0 531

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