C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005C6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140025-ENSG00000042088 CGP 9606 14:89794669-90044768
GeneTranscriptPositionBiotype
ENSG00000042088 (TDP1)
tyrosyl-DNA phosphodiesterase 1 		ENST00000335725 (TDP1-001) 89955951-90044768 protein_coding
ENST00000393452 (TDP1-003) 89955902-90043341 protein_coding
ENST00000393454 (TDP1-006) 89955938-90043344 protein_coding
ENST00000545686 (TDP1-004) 89956565-90043341 nonsense_mediated_decay
ENST00000553527 (TDP1-013) 89956037-89963552 protein_coding
ENST00000553569 (TDP1-012) 89956010-89957187 retained_intron
ENST00000553617 (TDP1-010) 89955941-89984587 protein_coding
ENST00000553989 (TDP1-014) 89956523-89963557 protein_coding
ENST00000554180 (TDP1-009) 89955907-89980587 protein_coding
ENST00000554976 (TDP1-002) 89954939-90043252 nonsense_mediated_decay
ENST00000555178 (TDP1-005) 89956572-90043315 nonsense_mediated_decay
ENST00000555565 (TDP1-015) 89955955-89980592 processed_transcript
ENST00000555880 (TDP1-007) 89963105-90043309 protein_coding
ENST00000556063 (TDP1-008) 89985159-90033616 protein_coding
ENST00000556498 (TDP1-017) 89958293-89963599 protein_coding
ENST00000556867 (TDP1-011) 89955993-89963569 protein_coding
ENST00000557782 (TDP1-016) 89975781-89983205 nonsense_mediated_decay
ENSG00000230997 (RAB42P1)
RAB42, member RAS oncogene family, pseudogene 1 		ENST00000555078 (RAB42P1-001) 89892128-89892443 processed_pseudogene
CIL_0005C6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021176-ENSMUSG00000021177 CGP 10090 12:99717531-99955219
GeneTranscriptPositionBiotype
ENSMUSG00000021176 (Efcab11)
EF-hand calcium binding domain 11 		ENSMUST00000046485 (Efcab11-201) 99717531-99883442 protein_coding
ENSMUSG00000021177 (Tdp1)
tyrosyl-DNA phosphodiesterase 1 		ENSMUST00000021594 (Tdp1-201) 99891173-99955214 protein_coding
ENSMUST00000125639 (Tdp1-004) 99884534-99887687 processed_transcript
ENSMUST00000126424 (Tdp1-005) 99911648-99912579 retained_intron
ENSMUST00000128739 (Tdp1-006) 99914006-99955219 retained_intron
ENSMUST00000137653 (Tdp1-003) 99886484-99891338 protein_coding
ENSMUST00000151019 (Tdp1-002) 99884517-99937362 retained_intron
ENSMUST00000153627 (Tdp1-001) 99884537-99955219 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005C6_0001ENSG00000042088ENST00000335725ENST00000393452ENST00000393454ENST00000545686ENST00000553527ENST00000553569ENST00000553617ENST00000553989ENST00000554180ENST00000554976ENST00000555178ENST00000555565ENST00000555880ENST00000556063ENST00000556498ENST00000556867ENST00000557782ENSG00000230997ENST00000555078CIL_0005C6_0002ENSMUSG00000021176ENSMUST00000046485ENSMUSG00000021177ENSMUST00000021594ENSMUST00000125639ENSMUST00000126424ENSMUST00000128739ENSMUST00000137653ENSMUST00000151019ENSMUST00000153627
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005C6_0001ENSG00000042088ENST00000335725ENST00000393452ENST00000393454ENST00000545686ENST00000553617ENST00000553989ENST00000554180ENST00000554976ENST00000555178ENST00000555880ENST00000556867ENSG00000230997ENST00000555078CIL_0005C6_0002ENSMUSG00000021176ENSMUST00000046485ENSMUSG00000021177ENSMUST00000021594ENSMUST00000126424ENSMUST00000128739ENSMUST00000151019ENSMUST00000153627
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000042088 ENST00000335725 1.180±0.00 1.677±0.00 N/A 0.778±0.01 0.376±0.00 0.347±0.17 0.053±0.00 0.143±0.00 N/A 0.646±0.00 N/A 0.935±0.31 N/A N/A
ENST00000393452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.472±0.00 N/A
ENST00000393454 N/A 1.584±0.00 N/A N/A 0.857±0.23 N/A 0.143±0.00 1.518±0.00 0.406±0.00 0.815±0.24 0.418±0.00 0.745±0.14 1.578±0.65 N/A
ENST00000545686 N/A N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A N/A N/A N/A N/A
ENST00000553527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553617 N/A N/A N/A N/A N/A 5.759±0.00 0.055±0.00 0.507±0.00 0.890±0.00 N/A 0.126±0.00 N/A N/A N/A
ENST00000553989 N/A N/A N/A N/A N/A 0.785±0.00 0.113±0.00 N/A 0.842±0.00 1.840±0.00 N/A 1.795±0.00 N/A N/A
ENST00000554180 N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000554976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.751±0.00
ENST00000555178 0.743±0.00 N/A N/A 0.408±0.00 N/A 0.306±0.00 0.214±0.00 N/A 0.692±0.00 1.005±0.00 N/A N/A N/A 7.562±0.00
ENST00000555565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555880 N/A N/A 0.283±0.00 N/A 1.008±0.00 N/A N/A 0.228±0.00 N/A N/A N/A N/A N/A N/A
ENST00000556063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556867 N/A N/A 0.605±0.00 N/A N/A N/A N/A N/A 0.815±0.00 N/A N/A N/A N/A N/A
ENST00000557782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230997 ENST00000555078 N/A N/A N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021176 ENSMUST00000046485 0.241±0.09 0.160±0.13 0.112±0.00 1.226±0.91 0.149±0.09 0.402±0.17 0.078±0.01 0.072±0.04 1.082±1.06 0.377±0.12 0.029±0.01 1.160±0.21 1.224±0.88 2.627±0.65
ENSMUSG00000021177 ENSMUST00000021594 2.303±0.00 1.127±0.42 N/A 1.199±0.00 1.831±0.93 1.802±0.00 N/A 0.520±0.00 N/A N/A 0.726±0.59 3.264±1.24 5.663±3.64 2.379±0.00
ENSMUST00000125639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126424 N/A N/A N/A 2.742±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128739 2.254±0.23 1.243±0.31 2.193±0.00 3.383±0.00 2.147±0.26 1.421±0.70 1.795±0.18 2.583±0.47 0.841±0.31 2.449±0.46 0.937±0.04 4.749±0.04 5.278±1.30 10.262±0.00
ENSMUST00000137653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151019 N/A N/A N/A 0.994±0.00 N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A N/A
ENSMUST00000153627 4.047±1.02 1.916±0.27 3.729±1.06 13.261±1.00 2.307±0.55 1.592±0.63 1.426±0.11 2.241±0.57 5.639±5.22 3.096±1.15 1.164±0.08 6.524±1.80 7.066±1.96 29.049±13.18

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