C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate N-acetylgalactosaminyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130214 Csgalnact1-002 ENSMUSG00000036356 10090 - 8:68357967-68735114 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000130214
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000130214 0.797±0.21 0.198±0.00 0.051±0.00 0.489±0.26 0.168±0.05 0.582±0.20 0.341±0.07 0.077±0.01 1.872±0.29 0.206±0.06 0.898±0.42 2.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IX CIL_0003IX_0002 CGP 8:68276567-68735146
CIL_0003TM CIL_0003TM_0002 CGP 8:68356781-68829410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001958 IMP endochondral ossification
GO:0008376 ISS acetylgalactosaminyltransferase activity
GO:0008955 ISS peptidoglycan glycosyltransferase activity
GO:0015020 ISS glucuronosyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0019276 ISS UDP-N-acetylgalactosamine metabolic process
GO:0030198 IMP extracellular matrix organization
GO:0030204 IMP chondroitin sulfate metabolic process
GO:0030206 ISS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0046398 ISS UDP-glucuronate metabolic process
GO:0046872 IEA metal ion binding
GO:0047237 ISS glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0047238 ISS glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050653 ISS chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0051216 IMP cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332246 CSGALNACT1-001 protein_coding Homo_sapiens 0 1670
ENST00000397998 CSGALNACT1-002 nonsense_mediated_decay Homo_sapiens 0 924
ENST00000454498 CSGALNACT1-004 protein_coding Homo_sapiens 0 1670
ENST00000518542 CSGALNACT1-016 processed_transcript Homo_sapiens 0 350
ENST00000522854 CSGALNACT1-005 protein_coding Homo_sapiens 0 1666

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