C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-raf-leukemia viral oncogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130528 Raf1-006 ENSMUSG00000000441 10090 - 6:115618067-115634621 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000130528
Transcript ID Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000130528 6.532±0.65 12.884±0.39 9.634±0.00 6.276±0.83 5.624±0.25 7.558±1.51 6.624±0.71 4.934±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KF CIL_0004KF_0002 CGP 6:115583544-115618670
CIL_0005SJ CIL_0005SJ_0002 CGP 6:115601938-115676635
CIL_0005SC CIL_0005SC_0002 CGP 6:115618067-115762466

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000170447 MKRN2-001 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000251849 RAF1-001 protein_coding Homo_sapiens 0 833
ENST00000416093 RAF1-010 nonsense_mediated_decay Homo_sapiens 8e-24 115
ENST00000423275 RAF1-006 nonsense_mediated_decay Homo_sapiens 0 833
ENST00000432427 RAF1-008 protein_coding Homo_sapiens 0 833
ENST00000442415 RAF1-007 protein_coding Homo_sapiens 0 830
ENST00000460610 RAF1-005 retained_intron Homo_sapiens 0 442
ENST00000465826 RAF1-004 retained_intron Homo_sapiens 0 490
ENST00000471449 RAF1-009 retained_intron Homo_sapiens 0 739
ENST00000475353 RAF1-012 retained_intron Homo_sapiens 0 484
ENST00000491290 RAF1-011 retained_intron Homo_sapiens 0 231
ENST00000492690 RAF1-003 retained_intron Homo_sapiens 1e-24 117
ENST00000494557 RAF1-002 retained_intron Homo_sapiens 0 381

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