C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130575 Prpf40b-002 ENSMUSG00000023007 10090 + 15:99295241-99316114 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000130575
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000130575 4.309±0.42 2.542±0.05 11.511±3.33 2.540±0.58 1.371±0.09 1.377±0.18 2.019±0.25 1.127±0.23 2.353±0.34 2.012±0.33 4.714±0.68 1.661±1.19 4.847±0.25

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261897 PRPF40B-002 protein_coding Homo_sapiens 0 2109
ENST00000335154 FMNL3-002 protein_coding Homo_sapiens 0 396
ENST00000380281 PRPF40B-001 protein_coding Homo_sapiens 0 2261
ENST00000546626 PRPF40B-014 retained_intron Homo_sapiens 0 353
ENST00000548399 PRPF40B-012 retained_intron Homo_sapiens 0 545
ENST00000548436 PRPF40B-009 retained_intron Homo_sapiens 0 789
ENST00000548825 PRPF40B-019 protein_coding Homo_sapiens 0 2261
ENST00000549547 PRPF40B-016 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000551111 PRPF40B-011 retained_intron Homo_sapiens 0 689
ENST00000551269 PRPF40B-017 retained_intron Homo_sapiens 0 250
ENST00000551418 PRPF40B-010 retained_intron Homo_sapiens 0 446

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