C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich protein specific kinase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130643 Srpk1-001 ENSMUSG00000004865 10090 - 17:28587648-28622521 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000130643
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000130643 5.521±2.26 1.118±0.15 8.524±0.13 12.352±3.53 3.623±0.81 5.048±1.79 3.359±1.24 6.139±0.93 4.583±2.91 3.477±0.58 3.050±0.27 5.642±2.12 12.667±4.22 20.507±2.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0002 VISTA 17:28043766-28646334
CIL_0002O2 CIL_0002O2_0002 CGP 17:28575718-28622521
CIL_0002O7 CIL_0002O7_0002 CGP 17:28587648-28689987

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IDA magnesium ion binding
GO:0004674 IDA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IDA ATP binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0006397 IEA mRNA processing
GO:0006468 IDA protein phosphorylation
GO:0007059 ISS chromosome segregation
GO:0008380 IEA RNA splicing
GO:0030154 IEA cell differentiation
GO:0035556 IDA intracellular signal transduction
GO:0044822 IEA poly(A) RNA binding
GO:0045070 IEA positive regulation of viral genome replication
GO:0045071 IEA negative regulation of viral genome replication
GO:0050684 IDA regulation of mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346162 SRPK1-003 retained_intron Homo_sapiens 0 2617
ENST00000361690 SRPK1-005 protein_coding Homo_sapiens 0 2615
ENST00000373821 SRPK1-008 processed_transcript Homo_sapiens 0 701
ENST00000373822 SRPK1-201 protein_coding Homo_sapiens 0 2617
ENST00000373825 SRPK1-001 protein_coding Homo_sapiens 0 2737
ENST00000423325 SRPK1-002 protein_coding Homo_sapiens 0 2514
ENST00000505885 SRPK1-013 retained_intron Homo_sapiens 0 211
ENST00000507292 SRPK1-012 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000507909 SRPK1-007 protein_coding Homo_sapiens 0 195
ENST00000508473 SRPK1-006 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000510290 SRPK1-010 protein_coding Homo_sapiens 0 651
ENST00000512445 SRPK1-004 protein_coding Homo_sapiens 0 451
ENST00000513367 SRPK1-009 retained_intron Homo_sapiens 0 599

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