C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRSF protein kinase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373825 SRPK1-001 ENSG00000096063 9606 - 6:35832966-35921342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverLungOvaryPlacentaTestisENST00000373825
Transcript ID Adipose Brain Breast Colon Liver Lung Ovary Placenta Testis
ENST00000373825 0.856±0.00 1.702±0.00 2.821±1.35 2.879±0.00 1.137±0.00 1.549±0.00 9.092±6.91 4.130±3.55 27.243±21.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002O1 CIL_0002O1_0001 CGP 6:35794982-35833874
CIL_0002O2 CIL_0002O2_0001 CGP 6:35805293-35921342
CIL_0002O7 CIL_0002O7_0001 CGP 6:35832966-36024868

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IDA magnesium ion binding
GO:0004672 TAS:IEA protein kinase activity
GO:0004674 IDA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IDA:IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0006397 IEA mRNA processing
GO:0006468 IDA:IEA protein phosphorylation
GO:0007059 IDA chromosome segregation
GO:0008380 IEA RNA splicing
GO:0016032 IEA viral process
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0035092 TAS sperm chromatin condensation
GO:0035556 IDA intracellular signal transduction
GO:0044822 IDA poly(A) RNA binding
GO:0045070 IDA positive regulation of viral genome replication
GO:0045071 IDA negative regulation of viral genome replication
GO:0045087 IC innate immune response
GO:0048024 TAS regulation of mRNA splicing, via spliceosome
GO:0050684 IDA regulation of mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130643 Srpk1-001 protein_coding Mus_musculus 0 2737
ENSMUST00000004987 Srpk1-002 nonsense_mediated_decay Mus_musculus 0 1160
ENSMUST00000120768 Gm8876-001 processed_pseudogene Mus_musculus 0 1098
ENSMUST00000145023 Srpk1-003 retained_intron Mus_musculus 0 1088
ENSMUST00000136504 Srpk1-007 retained_intron Mus_musculus 0 462
ENSMUST00000126683 Srpk1-004 retained_intron Mus_musculus 0 368
ENSMUST00000145730 Srpk1-006 retained_intron Mus_musculus 0 261
ENSMUST00000114767 Srpk1-005 protein_coding Mus_musculus 0 209

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