C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structure specific recognition protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130729 Ssrp1-002 ENSMUSG00000027067 10090 + 2:85037455-85045772 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000130729
Transcript ID Adipose Bladder Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000130729 13.013±0.98 10.218±2.35 22.575±2.21 4.249±0.36 22.717±14.26 7.230±0.00 3.569±0.00 37.384±20.35 31.946±27.95 38.294±24.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NZ CIL_0002NZ_0002 CGP 2:84998583-85047109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278412 SSRP1-001 protein_coding Homo_sapiens 0 2447
ENST00000293880 SSRP1-002 retained_intron Homo_sapiens 0 987
ENST00000526696 SSRP1-004 protein_coding Homo_sapiens 0 1048
ENST00000529002 SSRP1-003 protein_coding Homo_sapiens 0 889

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