C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pecanex-like 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131127 Pcnxl2-001 ENSMUSG00000060212 10090 - 8:125837607-125898317 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverPlacentaENSMUST00000131127
Transcript ID Breast Liver Placenta
ENSMUST00000131127 0.045±0.00 0.009±0.00 0.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086G CIL_00086G_0002 VISTA 8:125257735-125859984
CIL_0001OO CIL_0001OO_0002 CGP 8:125729963-125898317
CIL_0006KA CIL_0006KA_0002 CGP 8:125751508-125947439

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258229 PCNXL2-002 protein_coding Homo_sapiens 0 1288
ENST00000324142 PCNXL2-003 retained_intron Homo_sapiens 0 706
ENST00000430153 PCNXL2-201 protein_coding Homo_sapiens 0 713
ENST00000475463 PCNXL2-005 nonsense_mediated_decay Homo_sapiens 0 713
ENST00000488780 PCNXL2-010 protein_coding Homo_sapiens 0 688
ENST00000506013 RP5-862P8.3-001 unprocessed_pseudogene Homo_sapiens 0 219
ENST00000517808 PCNXL2-018 nonsense_mediated_decay Homo_sapiens 2e-24 115
ENST00000518351 PCNXL2-019 protein_coding Homo_sapiens 6e-28 128
ENST00000519530 PCNXL2-017 retained_intron Homo_sapiens 0 204

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