C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pecanex-like 2 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060212 Pcnxl2 10090 - 8:125751508-125898317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047239 Pcnxl2-002 125751508-125898317 protein_coding
  ENSMUST00000119305 Pcnxl2-004 125751511-125774128 retained_intron
  ENSMUST00000120589 Pcnxl2-003 125751509-125839850 retained_intron
  ENSMUST00000131127 Pcnxl2-001 125837607-125898317 protein_coding
  ENSMUST00000187772 Pcnxl2-007 125861191-125898275 processed_transcript
  ENSMUST00000189197 Pcnxl2-006 125827163-125829033 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047239ENSMUST00000119305ENSMUST00000120589ENSMUST00000131127ENSMUST00000189197
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047239 N/A 0.044±0.00 N/A 5.370±3.05 N/A 0.081±0.03 0.018±0.00 0.024±0.01 0.021±0.01 N/A N/A N/A N/A N/A
ENSMUST00000119305 0.285±0.16 0.107±0.01 0.333±0.15 13.391±0.00 0.100±0.02 0.130±0.06 0.104±0.07 0.071±0.03 0.034±0.02 0.378±0.00 0.177±0.08 1.667±0.36 0.212±0.24 2.531±0.94
ENSMUST00000120589 0.540±0.61 0.153±0.03 0.400±0.29 1.334±0.43 N/A 0.082±0.03 0.145±0.04 0.051±0.05 0.023±0.01 0.120±0.00 0.124±0.02 2.783±1.45 0.123±0.07 0.083±0.00
ENSMUST00000131127 N/A N/A N/A N/A 0.045±0.00 N/A N/A N/A 0.009±0.00 N/A N/A N/A 0.010±0.00 N/A
ENSMUST00000189197 N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086G CIL_00086G_0002 VISTA 8:125257735-125859984
CIL_0001OO CIL_0001OO_0002 CGP 8:125729963-125898317
CIL_0006KA CIL_0006KA_0002 CGP 8:125751508-125947439

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055698 pcnxl2 pecanex-like 2 (Drosophila) protein_coding Danio_rerio
ENSG00000135749 PCNXL2 pecanex-like 2 (Drosophila) protein_coding Homo_sapiens

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