C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131252 Sf1-002 ENSMUSG00000024949 10090 + 19:6363690-6378030 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000131252
Transcript ID Adipose Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000131252 9.601±0.16 8.036±0.00 7.168±0.00 7.854±1.06 6.005±2.11 12.404±0.83 5.878±0.00 13.092±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YW CIL_0001YW_0002 CGP 19:6363690-6398459

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0030238 IGI male sex determination
GO:0033327 IGI Leydig cell differentiation
GO:0044822 IEA poly(A) RNA binding
GO:0048662 IEA negative regulation of smooth muscle cell proliferation
GO:0050810 IGI regulation of steroid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000227503 SF1-002 protein_coding Homo_sapiens 0 2510
ENST00000334944 SF1-001 protein_coding Homo_sapiens 0 2896
ENST00000377387 SF1-006 protein_coding Homo_sapiens 0 2207
ENST00000377390 SF1-005 protein_coding Homo_sapiens 0 3975
ENST00000377394 SF1-004 protein_coding Homo_sapiens 0 2492
ENST00000413725 SF1-019 protein_coding Homo_sapiens 0 1315
ENST00000413951 SF1-011 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000432725 SF1-018 protein_coding Homo_sapiens 0 364
ENST00000433274 SF1-016 protein_coding Homo_sapiens 0 3016
ENST00000443908 SF1-014 protein_coding Homo_sapiens 0 717
ENST00000448404 SF1-003 nonsense_mediated_decay Homo_sapiens 0 1868
ENST00000463343 SF1-007 retained_intron Homo_sapiens 0 512
ENST00000477596 SF1-015 retained_intron Homo_sapiens 0 523
ENST00000482693 SF1-012 retained_intron Homo_sapiens 0 422
ENST00000486867 SF1-020 protein_coding Homo_sapiens 0 1332
ENST00000489544 SF1-017 processed_transcript Homo_sapiens 0 695

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