C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131631 Ddx55-003 ENSMUSG00000029389 10090 + 5:124552869-124567955 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000131631
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000131631 2.185±0.37 1.671±0.32 1.912±0.30 3.915±0.44 1.763±0.69 1.879±0.34 0.668±0.11 0.738±0.16 0.940±0.51 1.506±0.27 0.461±0.09 1.993±0.35 1.390±0.17 0.729±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J8 CIL_0003J8_0002 CGP 5:124540695-124569660
CIL_000395 CIL_000395_0002 CGP 5:124552864-124579131

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238146 DDX55-001 protein_coding Homo_sapiens 0 1306
ENST00000354291 DDX55-012 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000538744 DDX55-004 protein_coding Homo_sapiens 0 789
ENST00000539934 DDX55-002 retained_intron Homo_sapiens 0 874
ENST00000541259 DDX55-015 processed_transcript Homo_sapiens 0 318
ENST00000542286 DDX55-003 retained_intron Homo_sapiens 0 1062
ENST00000543016 DDX55-013 retained_intron Homo_sapiens 0 189
ENST00000544738 DDX55-009 nonsense_mediated_decay Homo_sapiens 0 942

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