C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP40 pre-mRNA processing factor 40 homolog A (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132031 Prpf40a-004 ENSMUSG00000061136 10090 - 2:53176168-53191225 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryENSMUST00000132031
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000132031 4.504±1.08 9.954±1.95 7.390±1.24 7.684±1.34 3.123±0.65 2.658±0.39 6.040±1.21 12.283±2.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E5 CIL_0007E5_0002 CGP 2:52857860-53191284
CIL_0007DS CIL_0007DS_0002 CGP 2:53134704-53219220

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354363 PRPF40A-015 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000410080 PRPF40A-001 protein_coding Homo_sapiens 0 392
ENST00000448428 PRPF40A-008 protein_coding Homo_sapiens 0 337
ENST00000450303 PRPF40A-002 retained_intron Homo_sapiens 0 335
ENST00000467114 PRPF40A-009 retained_intron Homo_sapiens 0.000000004 66
ENST00000486100 PRPF40A-003 processed_transcript Homo_sapiens 0 207
ENST00000489741 PRPF40A-006 retained_intron Homo_sapiens 0 209
ENST00000493468 PRPF40A-016 protein_coding Homo_sapiens 0 617
ENST00000545856 PRPF40A-004 protein_coding Homo_sapiens 0 669

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