C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000132639  |
Cops6-005 |
ENSMUSG00000019494 |
10090 | + |
5:138162777-138163919  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008QI | CIL_0008QI_0002 | VISTA | 5:137705744-138314172 |
| CIL_0002GB | CIL_0002GB_0002 | CGP | 5:138139702-138164646 |
| CIL_0003E2 | CIL_0003E2_0002 | CGP | 5:138161071-138172422 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005515 | IPI | protein binding |
| GO:0008180 | IDA | COP9 signalosome |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000303904
|
COPS6-001 | protein_coding | Homo_sapiens | 0 | 422 |
|
ENST00000418625
|
COPS6-004 | protein_coding | Homo_sapiens | 0 | 422 |
|
ENST00000426712
|
COPS6-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 300 |
|
ENST00000474823
|
COPS6-010 | retained_intron | Homo_sapiens | 0 | 422 |
|
ENST00000483891
|
COPS6-008 | retained_intron | Homo_sapiens | 0 | 320 |
