C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418625 COPS6-004 ENSG00000168090 9606 + 7:100088981-100091905 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000418625
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000418625 38.627±0.00 30.955±0.00 46.237±0.00 17.589±15.93 22.188±18.85 28.683±0.00 16.333±14.75 10.502±7.33 23.572±0.00 43.153±0.00 33.360±19.03 55.358±11.95 34.559±20.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0002GB CIL_0002GB_0001 CGP 7:100064033-100092200
CIL_0003E2 CIL_0003E2_0001 CGP 7:100088954-100101940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019638 Cops6-001 protein_coding Mus_musculus 0 1452
ENSMUST00000110951 Cops6-002 protein_coding Mus_musculus 0 1415
ENSMUST00000154867 Cops6-003 retained_intron Mus_musculus 0 1027
ENSMUST00000127881 Cops6-004 retained_intron Mus_musculus 0 475
ENSMUST00000132639 Cops6-005 protein_coding Mus_musculus 0 422

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