C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426712 COPS6-005 ENSG00000168090 9606 + 7:100090428-100091907 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleENST00000426712
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle
ENST00000426712 21.382±0.00 12.986±0.00 26.861±0.00 13.991±0.00 32.492±0.00 15.852±0.00 23.149±0.00 18.482±14.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0002GB CIL_0002GB_0001 CGP 7:100064033-100092200
CIL_0003E2 CIL_0003E2_0001 CGP 7:100088954-100101940

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110951 Cops6-002 protein_coding Mus_musculus 0 797
ENSMUST00000019638 Cops6-001 protein_coding Mus_musculus 0 797
ENSMUST00000154867 Cops6-003 retained_intron Mus_musculus 0 536
ENSMUST00000132639 Cops6-005 protein_coding Mus_musculus 0 300
ENSMUST00000127881 Cops6-004 retained_intron Mus_musculus 0 200

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