C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003E2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168090-ENSG00000166508 CGP 9606 7:100088954-100101940
GeneTranscriptPositionBiotype
ENSG00000166508 (MCM7)
minichromosome maintenance complex component 7 		ENST00000303887 (MCM7-001) 100092781-100101940 protein_coding
ENST00000343023 (MCM7-003) 100092780-100101940 protein_coding
ENST00000354230 (MCM7-201) 100092729-100100780 protein_coding
ENST00000425308 (MCM7-009) 100098140-100100869 protein_coding
ENST00000463722 (MCM7-007) 100098059-100101409 retained_intron
ENST00000465688 (MCM7-015) 100099464-100101310 retained_intron
ENST00000465738 (MCM7-011) 100099686-100100393 retained_intron
ENST00000467516 (MCM7-016) 100099319-100100473 retained_intron
ENST00000477372 (MCM7-010) 100097613-100099345 retained_intron
ENST00000485286 (MCM7-006) 100092781-100100757 retained_intron
ENST00000489841 (MCM7-002) 100092728-100101370 retained_intron
ENST00000491245 (MCM7-005) 100093292-100099737 nonsense_mediated_decay
ENST00000493352 (MCM7-014) 100093316-100095664 retained_intron
ENST00000621318 (MCM7-202) 100092729-100101940 protein_coding
ENSG00000168090 (COPS6)
COP9 signalosome subunit 6 		ENST00000303904 (COPS6-001) 100088954-100092200 protein_coding
ENST00000418625 (COPS6-004) 100088981-100091905 protein_coding
ENST00000419210 (COPS6-007) 100088975-100089627 protein_coding
ENST00000426712 (COPS6-005) 100090428-100091907 nonsense_mediated_decay
ENST00000465027 (COPS6-006) 100088969-100090362 retained_intron
ENST00000468499 (COPS6-003) 100088990-100091248 retained_intron
ENST00000472107 (COPS6-002) 100088982-100090238 retained_intron
ENST00000474823 (COPS6-010) 100090362-100091750 retained_intron
ENST00000483891 (COPS6-008) 100090437-100091448 retained_intron
ENST00000496358 (COPS6-009) 100088993-100090780 retained_intron
ENSG00000207547 (MIR25)
microRNA 25 		ENST00000384816 (MIR25-201) 100093560-100093643 miRNA
ENSG00000207757 (MIR93)
microRNA 93 		ENST00000385024 (MIR93-201) 100093768-100093847 miRNA
ENSG00000208036 (MIR106B)
microRNA 106b 		ENST00000385301 (MIR106B-201) 100093993-100094074 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003E2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019494-ENSMUSG00000029730 CGP 10090 5:138161071-138172422
GeneTranscriptPositionBiotype
ENSMUSG00000019494 (Cops6)
COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana) 		ENSMUST00000019638 (Cops6-001) 138161071-138164646 protein_coding
ENSMUST00000110951 (Cops6-002) 138161100-138163978 protein_coding
ENSMUST00000127881 (Cops6-004) 138161109-138162384 retained_intron
ENSMUST00000132639 (Cops6-005) 138162777-138163919 protein_coding
ENSMUST00000154867 (Cops6-003) 138161169-138164139 retained_intron
ENSMUSG00000019518 (Ap4m1)
adaptor-related protein complex AP-4, mu 1 		ENSMUST00000019662 (Ap4m1-001) 138172002-138178708 protein_coding
ENSMUST00000134100 (Ap4m1-007) 138176569-138178687 retained_intron
ENSMUST00000142687 (Ap4m1-006) 138174786-138177200 retained_intron
ENSMUST00000143241 (Ap4m1-002) 138172068-138178681 nonsense_mediated_decay
ENSMUST00000151318 (Ap4m1-004) 138172005-138175013 protein_coding
ENSMUST00000155745 (Ap4m1-005) 138172582-138174944 retained_intron
ENSMUST00000157031 (Ap4m1-003) 138172047-138174372 retained_intron
ENSMUSG00000029730 (Mcm7)
minichromosome maintenance deficient 7 (S. cerevisiae) 		ENSMUST00000000505 (Mcm7-001) 138164583-138172422 protein_coding
ENSMUST00000125316 (Mcm7-010) 138164600-138165716 retained_intron
ENSMUST00000139223 (Mcm7-009) 138168709-138169643 processed_transcript
ENSMUST00000139983 (Mcm7-006) 138168878-138171017 protein_coding
ENSMUST00000142254 (Mcm7-008) 138168060-138170381 retained_intron
ENSMUST00000147920 (Mcm7-005) 138169411-138171241 protein_coding
ENSMUST00000148094 (Mcm7-007) 138169209-138170661 protein_coding
ENSMUST00000148879 (Mcm7-002) 138164600-138171818 protein_coding
ENSMUST00000153867 (Mcm7-004) 138168456-138171266 protein_coding
ENSMUST00000155902 (Mcm7-003) 138168879-138171815 protein_coding
ENSMUSG00000065514 (Mir106b)
microRNA 106b 		ENSMUST00000083580 (Mir106b-201) 138165737-138165818 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003E2_0001ENSG00000166508ENST00000303887ENST00000343023ENST00000425308ENST00000477372ENST00000485286ENST00000489841ENSG00000168090ENST00000303904ENST00000418625ENST00000426712ENST00000468499ENST00000496358ENSG00000207547ENST00000384816ENSG00000207757ENST00000385024ENSG00000208036ENST00000385301CIL_0003E2_0002ENSMUSG00000019494ENSMUST00000019638ENSMUST00000110951ENSMUST00000127881ENSMUSG00000019518ENSMUST00000019662ENSMUSG00000029730ENSMUST00000000505ENSMUST00000148879ENSMUSG00000065514ENSMUST00000083580
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166508 ENST00000303887 8.193±0.00 13.216±0.00 N/A N/A N/A N/A 3.518±3.03 11.585±0.00 3.913±0.00 7.385±0.00 26.847±0.00 24.909±20.61 15.317±2.81 36.970±0.18
ENST00000343023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.954±0.00 9.103±0.00 N/A N/A
ENST00000354230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425308 N/A N/A 1.782±0.00 N/A 6.129±0.00 N/A N/A 2.701±0.00 2.543±0.00 N/A N/A N/A N/A N/A
ENST00000463722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477372 N/A N/A 3.316±0.00 N/A N/A N/A N/A 4.847±0.00 5.247±0.00 N/A N/A 75.142±53.51 38.022±0.00 93.019±0.00
ENST00000485286 N/A 10.261±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489841 N/A 11.819±0.00 N/A 2.163±0.00 7.199±0.00 9.199±0.00 2.685±1.74 6.046±3.76 2.252±0.00 4.743±1.80 2.313±0.00 49.056±44.55 22.651±13.55 56.490±0.00
ENST00000491245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168090 ENST00000303904 21.246±0.00 29.187±0.00 1.658±0.00 14.012±8.42 10.916±6.08 10.416±6.82 5.162±2.61 10.816±7.57 6.906±2.21 6.036±3.96 11.217±3.44 23.188±16.82 21.616±7.62 21.571±12.12
ENST00000418625 38.627±0.00 30.955±0.00 N/A 46.237±0.00 17.589±15.93 22.188±18.85 28.683±0.00 16.333±14.75 10.502±7.33 23.572±0.00 43.153±0.00 33.360±19.03 55.358±11.95 34.559±20.07
ENST00000419210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426712 N/A 21.382±0.00 N/A N/A 12.986±0.00 26.861±0.00 13.991±0.00 32.492±0.00 15.852±0.00 23.149±0.00 18.482±14.11 N/A N/A N/A
ENST00000465027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.285±0.00 N/A N/A
ENST00000472107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496358 N/A N/A 2.322±0.00 4.957±0.00 N/A N/A 1.405±0.00 3.122±0.00 N/A N/A 7.333±0.00 32.409±26.73 49.345±0.00 20.691±0.00
ENSG00000207547 ENST00000384816 N/A N/A N/A N/A 1.408±0.00 N/A 0.444±0.00 N/A 2.262±0.00 N/A N/A N/A N/A N/A
ENSG00000207757 ENST00000385024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.00
ENSG00000208036 ENST00000385301 N/A N/A N/A N/A N/A N/A 0.371±0.00 N/A N/A N/A N/A N/A N/A 1.060±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019494 ENSMUST00000019638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.512±0.77 N/A N/A N/A
ENSMUST00000110951 77.431±8.79 65.141±6.30 60.701±7.09 82.649±4.29 76.253±17.95 48.025±5.07 64.973±8.45 79.707±14.43 89.789±21.34 39.976±4.49 54.553±3.94 80.203±13.06 92.037±18.57 116.456±9.61
ENSMUST00000127881 N/A N/A N/A N/A N/A 80.977±0.00 N/A 72.479±0.00 69.885±12.05 N/A N/A N/A N/A N/A
ENSMUST00000132639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000019518 ENSMUST00000019662 17.510±1.03 N/A N/A N/A N/A N/A N/A N/A N/A 12.148±0.37 N/A N/A N/A N/A
ENSMUST00000134100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000157031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029730 ENSMUST00000000505 9.169±0.16 N/A 11.272±1.47 N/A N/A N/A N/A 9.676±1.39 26.675±12.19 N/A N/A N/A 12.627±0.00 22.639±0.00
ENSMUST00000125316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 76.459±0.00 N/A
ENSMUST00000153867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065514 ENSMUST00000083580 N/A N/A N/A 101.828±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 367.320±0.00 N/A

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