C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303904 COPS6-001 ENSG00000168090 9606 + 7:100088954-100092200 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303904
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303904 21.246±0.00 29.187±0.00 1.658±0.00 14.012±8.42 10.916±6.08 10.416±6.82 5.162±2.61 10.816±7.57 6.906±2.21 6.036±3.96 11.217±3.44 23.188±16.82 21.616±7.62 21.571±12.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0002GB CIL_0002GB_0001 CGP 7:100064033-100092200
CIL_0003E2 CIL_0003E2_0001 CGP 7:100088954-100101940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0008180 IDA COP9 signalosome
GO:0010388 IDA cullin deneddylation
GO:0016032 IEA viral process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019638 Cops6-001 protein_coding Mus_musculus 0 1507
ENSMUST00000110951 Cops6-002 protein_coding Mus_musculus 0 1439
ENSMUST00000154867 Cops6-003 retained_intron Mus_musculus 0 1026
ENSMUST00000127881 Cops6-004 retained_intron Mus_musculus 0 460
ENSMUST00000132639 Cops6-005 protein_coding Mus_musculus 0 422

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