C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP40 pre-mRNA processing factor 40 homolog A (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133384 Prpf40a-005 ENSMUSG00000061136 10090 - 2:53139172-53145309 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000133384
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000133384 43.993±0.00 84.613±45.02 93.149±79.95 146.455±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E5 CIL_0007E5_0002 CGP 2:52857860-53191284
CIL_0007DS CIL_0007DS_0002 CGP 2:53134704-53219220

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000410080 PRPF40A-001 protein_coding Homo_sapiens 0 856
ENST00000471167 PRPF40A-013 retained_intron Homo_sapiens 0 448
ENST00000471701 PRPF40A-014 retained_intron Homo_sapiens 0 294

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